FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508161
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT35570.6999750079207181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35040.6895452425510812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31110.6122075483950953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23210.4567450079797544No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC19950.3925921115551961No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15590.3067925322879953No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14020.2758968122307694No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13620.26802529119708124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13600.26763171514539685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13170.2591698300341821No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG12780.25149509702633616No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11500.22630622971853406No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11320.22276404525337443No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11230.22099295302079458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10070.198165542023099No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9950.19580408571299254No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9550.1879325646793044No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9550.1879325646793044No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9490.18675183652425117No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9450.18596468442088238No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9320.1834064400849337No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT8520.16766339801755742No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8420.16569551775913538No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8400.165301941707451No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7690.15132999187265456No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7590.1493621116142325No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7390.1454263510973884No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6910.13598052585696266No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6720.13224155336596077No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6440.1267314886423791No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6260.12318930417721942No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6230.12259894009969281No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6220.12240215207385062No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6100.12004069576374418No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5730.11275953880758263No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5640.1109884465750028No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG5600.110201294471634No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5420.10665911000647434No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5280.10390407764468347No Hit
TACTATAACGGTAAAGTTCCGTATGATGCAC5230.10292013751547245No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5100.10036189317952382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)