FastQCFastQC Report
Sun 21 May 2023
EGAF00007927641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513453
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT36030.7017195342124791No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18690.36400605313436674No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16650.32427505536047113No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16070.3129789873659322No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13130.2557196082212004No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13100.2551353288421725No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13030.25377201029110746No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA12640.24617637836374506No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12620.2457868587777265No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11950.23273795264610395No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11590.2257266000977694No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10690.20819821872693317No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10410.20274494452267297No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10270.20001830742054286No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10130.1972916703184128No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9650.18794320025396677No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8980.17489429412234422No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8810.17158337764118625No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8590.16729866219498182No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7970.1552235550284057No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7780.15152311896122916No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7620.1484069622730805No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7520.14645936434298756No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7420.14451176641289465No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6840.13321569841835573No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6500.1265938654560398No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6300.12269866959585395No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6280.12230915000983537No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6130.11938775311469599No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6130.11938775311469599No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5990.1166611160125659No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5820.11335019953140793No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5810.11315543973839864No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5790.11276592015238007No Hit
CTGACGGTTGATTTCATCTTTGGTGCGGACGTTGTCGGCGTGTG5590.10887072429219423No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5420.10555980781103626No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5400.10517028822501769No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5140.10010653360677609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)