FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513453
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36720.7151579599301201No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35460.6906182260109495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30690.5977178047455172No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26180.5098811380983264No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC19250.3749126015428871No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15090.2938925276510216No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14040.2734427493850459No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13900.27071611228291587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13890.27052135248990655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13540.26370475973458135No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG12920.25162965256800524No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12380.2411126237455035No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12110.2358541093342526No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11970.2331274722321225No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9880.19242267549318048No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9840.1916436363211433No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9690.18872223942600394No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9610.1871641610819296No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9430.18365848480776234No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9380.18268468584271588No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9250.18015280853359508No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8710.1696357797110933No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8350.1626244271627588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7990.1556130746144243No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT7900.15386023647734068No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7430.14470652620590393No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7410.14431700661988536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7340.14295368806882033No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7050.13730565407155085No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6640.12932050255816988No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6420.12503578711196547No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6370.124061988146919No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6350.1236724685609004No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5870.1143239984964544No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5790.11276592015238007No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5770.11237640056636147No Hit
TACTATAACGGTAAAGTTCCGTATGATGCAC5760.1121816407733522No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5740.1117921211873336No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5660.11023404284325926No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5250.1022488913298783No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG5160.10049605319279466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)