FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446019
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63221.4174284055163568No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25810.5786748994997971No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13060.29281263802663116No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9680.21703111302433303No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8530.19124745806792984No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8270.18541810999082997No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6880.15425351834787307No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6610.14819996457550014No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6260.14035276524094265No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5820.13048771464892753No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5760.1291424804772891No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5150.11546593306563174No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4850.10873976220743958No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4750.10649770525470888No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4730.10604929386416274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)