FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452835
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65891.4550553733699911No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26270.5801230028597613No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12690.28023452250819836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10190.22502677575717425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.18903132487550653No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.1850563671094328No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7130.15745249373392076No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7100.15679000077290847No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6330.13978601477359304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.12476950765731448No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5450.12035288791723253No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5430.11991122594322434No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5380.11880707100820388No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4960.10953216955403183No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4690.10356973290492123No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC4660.10290723994390892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)