FastQCFastQC Report
Wed 31 May 2023
EGAF00007927650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502180
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28940.5762873869927119No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG22150.4410769046955275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19930.396869648333267No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19580.38990003584372135No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16980.3381257716356685No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13380.2664383288860568No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13230.26345135210482296No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11830.23557290214664064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11820.2353737703612251No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11450.2280058943008483No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10470.20849097933012067No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.1296347923055478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6400.12744434266597635No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6280.12505476124098927No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5590.11131466804731373No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5520.10992074554940459No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5120.10195547413278108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)