FastQCFastQC Report
Wed 31 May 2023
EGAF00007927651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504811
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22550.4467018349441672No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16540.32764737693909207No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14730.2917923737794937No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13190.2612859070028189No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11890.23553369478874273No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11790.23355275538765996No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11350.2248366220228957No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10830.21453573713726523No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10640.21077195227520795No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10350.2050272280120679No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8600.17036078849311923No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6440.12757249742973112No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6080.1204411155858331No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.1196487398254No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5450.1079611973590116No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5150.10201837915576324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)