FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470401
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30390.6460445449733313No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29320.6232979946896372No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.23448079404593103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10060.2138600895831429No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6600.14030582417979554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6110.12988917965735616No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5850.12436198052300058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.11692152014982961No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5170.10990622894083983No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5160.10969364435874925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)