FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436183
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64641.48194679755974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28480.6529369553604794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.2540218211163663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9070.2079402452640291No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.14351774369931886No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5580.1279279568438018No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5470.1254060795583505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5400.12380124855851787No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4800.11004555427423812No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4680.10729441541738215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)