FastQCFastQC Report
Sun 21 May 2023
EGAF00007927664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455699
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27810.6102712536125819No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26390.5791103337948953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26190.5747214718487423No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19660.4314251293068451No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17760.3897309408183911No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15730.3451839920649376No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG12300.26991500968841275No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG12050.2644289322557214No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11660.25587065146072296No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11150.24467905349803268No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11010.24160685013572555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9770.21439590606957662No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9370.20561818217727051No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8310.18235721386265932No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC8010.17577392094342978No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7970.17489614855419913No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7920.1737989330676609No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7870.17270171758112263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7680.16853229873227724No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7670.1683128556349696No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.15448794050458745No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6860.1505379647530497No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6780.1487824199745885No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6490.14241857015266657No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5340.1171826139622865No Hit
GCATGCGCTGGTTTCAAAGTTGATAACCCGA4950.10862433316728805No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4890.10730767458344215No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4840.10621045909690388No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4790.10511324361036561No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4620.10138271095613552No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4600.10094382476152021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)