FastQCFastQC Report
Sun 21 May 2023
EGAF00007927666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422020
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61031.4461399933652432No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24010.5689303824463297No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22260.5274631534050519No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19670.46609165442396094No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14490.3433486564617791No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14050.3329226103028292No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11590.27463153405051893No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11250.266575043836785No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11040.26159897635183166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10680.25306857494905455No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9940.23553386095445714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9730.2305577934695038No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7960.18861665323918297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7320.17345149518980144No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7260.17202976162267192No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7240.17155585043362875No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7170.16989716127197763No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7110.1684754277048481No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC7040.166816738543197No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6670.1580493815458983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.14975593573764276No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6070.1438320458746031No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5930.1405146675513009No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5830.13814511160608503No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5210.12345386474574664No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4600.10899957347992985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4590.10876261788540828No Hit
GCATGCGCTGGTTTCAAAGTTGATAACCCGA4560.10805175110184351No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4320.10236481683332543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)