FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477841
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28960.6060593377294958No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27360.5725753964184739No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24200.5064446123292057No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23180.4850985997434293No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC23140.48426150121065376No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17350.36309148859139334No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16060.33609506090938196No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13340.2791723606806448No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12800.26787153048817497No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12290.2571985241952867No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12160.2544779539637662No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10630.22245893508510153No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10400.21764561852164213No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10310.21576214682289713No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10190.2132508512245705No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9560.20006654933335566No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8870.18562659964297748No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8800.18416167721062027No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG8390.1755814172496709No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8180.1711866499525993No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8140.17034955141982375No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8140.17034955141982375No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7980.16700115728872156No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7710.16135074219248663No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7290.15256120759834338No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7260.15193338369876172No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6590.1379119832747713No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6350.13288939207811803No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6330.13247084281173027No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6210.12995954721340364No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5940.1243091321171687No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5710.11949581555370928No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5700.11928654092051541No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.1178216184881582No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5490.11489177362344377No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5490.11489177362344377No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5170.1081949853612394No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5070.10610223902930054No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4780.10003327466667783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)