FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477841
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54591.1424302226054273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30150.6309630190795683No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29700.6215456605858434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29200.6110819289261491No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC24050.5033054928312974No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18970.39699397916880297No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17730.3710439246527611No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14980.31349340052444225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14420.3017740210655846No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14060.29424013427060464No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13830.2894268177071453No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG10970.2295742726136937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10830.22664442774897928No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10570.22120328728593822No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9900.2071818868619478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9830.2057169644295906No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9720.20341494346445785No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9330.19525323276989626No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9100.19043991620643685No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8880.18583587427617135No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8790.18395240257742637No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8470.17725561431522202No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8460.17704633968202813No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8170.1709773753194054No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8160.1707681006862115No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8130.17014027678662985No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7990.16721043192191545No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7690.16093219292609884No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7130.1492128134672412No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6520.13644706084241412No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6260.13100592037937306No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6060.12682042771549532No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.1257740545495259No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.12137928725245427No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5690.11907726628732151No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA5640.11803089312135207No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5630.1178216184881582No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5180.1084042599944333No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4870.10191674636542282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4840.10128892246584116No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4830.10107964783264727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)