FastQCFastQC Report
Sun 21 May 2023
EGAF00007927669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442956
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26550.5993823314279523No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24500.5531023397357752No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22520.5084026404428431No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC21660.48898761953783215No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21310.4810861575416069No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15920.35940364279973636No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14410.3253144781874498No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11560.2609740019324719No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11480.25916795347619176No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11400.2573619050199117No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11250.25397556416438655No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10700.24155898102746096No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9390.2119849375558746No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT9340.21085615727069956No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8530.19256991665086376No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8530.19256991665086376No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8360.18873206368126857No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8310.18760328339609353No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8180.18466845465463838No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7800.176089724487308No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7720.1742836760310279No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7530.16999431094736273No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7460.16841401854811763No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7460.16841401854811763No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6900.1557716793541571No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6780.15306260666973695No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6560.14809597341496672No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6480.14628992495868665No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6190.13974299930467135No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5720.12913246462402586No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5450.12303705108408058No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5350.12077949051373048No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5250.11852192994338039No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5250.11852192994338039No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5090.11490983303082021No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5090.11490983303082021No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4910.11084622400419003No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4520.10204173777982463No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4450.10046144538057956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)