FastQCFastQC Report
Sun 21 May 2023
EGAF00007927671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420787
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20120.47815165392466974No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16340.3883199813682457No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11180.26569261883090495No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11140.2647420191213131No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9120.21673673378692784No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8500.20200243828825512No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8040.19107054162794954No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7410.17609859620187887No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7340.17443504671009324No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6510.15471010273606361No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6280.14924415440591082No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5900.14021345716478884No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5870.13950050738259498No Hit
CGGAAACGGCTGCTGCGGCTGCTGCGGGATAATCTGTTCGCTAC5700.1354604586168299No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5460.12975686035927916No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4880.11597316457019824No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4690.11145781594963722No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4330.10290241856331112No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4300.10218946878111727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)