FastQCFastQC Report
Wed 31 May 2023
EGAF00007927672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420787
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62931.4955309931152816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21310.5064319952850255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20580.4890835505849753No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12150.28874466178850583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11750.2792386646925879No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10830.2573748713719768No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9220.21911323306090727No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8670.2060424870540202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7940.18869404235397005No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7630.1813268946046337No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7250.1722961973635117No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6510.15471010273606361No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.14995710418810468No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6020.1430652562935642No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5840.13878755760040115No Hit
CAGCCGCAGCAGTCCTACCCTGTTCAGCCGC5690.13522280868943196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5660.1345098589072381No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5520.13118275992366685No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5480.13023216021407505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5360.12738036108529968No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5310.12619211144830994No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.12096381304555512No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4920.11692376427979001No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4710.11193311580443312No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4630.11003191638524953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)