FastQCFastQC Report
Sun 21 May 2023
EGAF00007927673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457824
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22980.5019396099811282No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17750.38770357167819947No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12650.2763070524917872No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12650.2763070524917872No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10180.22235618927797582No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9220.20138743272523937No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9200.20095058363039073No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8510.18587928985811142No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7940.17342909065492415No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7300.15944991961976654No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6720.14678129586915495No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6580.14372335220521423No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6220.13586006849793808No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6090.1330205493814217No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6080.13280212483399734No Hit
CGGAAACGGCTGCTGCGGCTGCTGCGGGATAATCTGTTCGCTAC5770.12603096386384285No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4940.10790172642762283No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4640.10134899000489271No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4630.10113056545746836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)