FastQCFastQC Report
Sun 21 May 2023
EGAF00007927674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457824
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31100.6793003424896904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23560.5146082337317397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23340.5098028936884043No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14010.3060127909414972No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13250.2894125253372475No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12030.2627647305514783No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11050.2413591249038932No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9520.20794016914796953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.19308729992311457No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8320.181729223457049No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8200.17910812888795696No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7100.1550814286712798No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6990.15267875864961206No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6610.14437862584748723No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6530.14263122946809254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6410.1400101348990005No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6360.1389180121618788No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6320.13804431397218145No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6090.1330205493814217No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.13214685119172434No Hit
CAGCCGCAGCAGTCCTACCCTGTTCAGCCGC5890.12865205843293492No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5630.12297302019990215No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5310.11598343468232333No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5190.11336234011323128No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.11139651918641225No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4880.10659117914307682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)