FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424506
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19600.4617131442193985No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16580.39057162914069526No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11240.2647783541339816No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11060.26053813138094634No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9010.21224670558248884No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8540.20117501283845224No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7950.18727650492572542No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7880.18562752941065616No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7820.18421412182631106No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6770.15947948910027185No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6150.14487427739537248No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5880.13851394326581956No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5800.1366293998200261No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5590.13168247327481825No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5390.1269711146603346No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5190.12225975604585095No Hit
CGGAAACGGCTGCTGCGGCTGCTGCGGGATAATCTGTTCGCTAC5140.12108191639223004No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4710.11095249537109017No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4330.10200091400357121No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4310.10152977814212284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)