FastQCFastQC Report
Wed 31 May 2023
EGAF00007927676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424506
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64431.5177641776559105No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21870.5151870644937881No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20190.4756116521321253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12180.2869217396220548No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11480.270431984471362No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11430.2692541448177411No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9270.21837147178131758No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8450.1990549014619346No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8140.1917522956094849No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.1875120728564496No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7290.17172902149792935No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6290.14817222842551106No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6250.14722995670261432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.1451098453260967No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6110.14393200567247577No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6030.1420474622266823No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5930.13969178291944048No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.13804280740437122No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5820.13710053568147446No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5780.13615826395857775No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5490.12932679396757643No Hit
CAGCCGCAGCAGTCCTACCCTGTTCAGCCGC5150.12131748432295422No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4770.11236590295543526No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4760.11213033502471108No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.10883238399457251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)