FastQCFastQC Report
Wed 31 May 2023
EGAF00007927677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463489
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15320.3305364312853164No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG14450.3117657592736829No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14230.3070191525580974No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG13290.28673819659150485No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11290.24358722644981867No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10990.23711458092856574No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9330.20129927571096617No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8470.1827443585500411No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT7970.17195661601461953No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7870.16979906750753523No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7680.16569972534407504No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6830.14736056303385842No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6470.1395933884083549No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6400.13808310445339586No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5890.1270796070672659No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5790.12492205856018158No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5590.12060696154601297No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5570.1201754518445961No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5240.11305554177121788No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5240.11305554177121788No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5170.11154525781625886No Hit
GGAGGTGTGAGACCAGGAACCGCTAACCGGGTTCGTCTGGTTGA5050.10895619960775767No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4910.10593563169783965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)