FastQCFastQC Report
Wed 31 May 2023
EGAF00007927678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463489
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30740.6632304110777171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28830.6220212345924068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19670.4243897913434839No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA15190.32773161822610675No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA14220.30680339770738896No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC13260.2860909320393796No Hit
TCCTACACCAACGGCAAACTGACTATCACCC11180.24121392309202594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8520.18382313280358326No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8290.17886077123728936No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8140.1756244484766629No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC7980.172172370865328No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7570.1633264219862823No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7320.1579325507185715No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6990.1508126406451933No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6500.1402406529604802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6070.13096319438001766No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5920.1277268716193912No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.1257850779630153No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5780.12470630370947314No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.12341177460522257No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5510.11888092274034551No Hit
TCTATCGTAGTGACCGGCAACGCAGGTTCCG5440.11737063878538649No Hit
CAACAGGATCTGAGCAACCCGACCGCCTCTA5330.11499733542759374No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5260.11348705147263473No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5180.11176101266696728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)