FastQCFastQC Report
Wed 31 May 2023
EGAF00007927679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467523
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15750.3368818218568926No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG15020.32126761678035093No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13530.2893975269665877No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12930.2765639337529918No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12620.2699332439259673No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10510.22480177445815497No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8850.18929549990053965No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8510.1820231304128353No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7800.1668367117767468No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT7690.1644838863542542No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6900.14758632195635293No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6830.14608906941476676No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6480.1386028067068358No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6250.13368326264162406No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6120.13090265077867827No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5960.1274803592550527No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5820.12448585417188032No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5800.12405806773142711No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5730.12256081518984092No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4860.10395210503012686No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4830.10331042536944705No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4820.10309653214922046No Hit
GGAGGTGTGAGACCAGGAACCGCTAACCGGGTTCGTCTGGTTGA4820.10309653214922046No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4790.10245485248854068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)