FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461544
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14660.317629521779072No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13580.2942298025757024No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10990.23811380930095508No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5390.11678193195014994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)