FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465123
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15600.33539515354003135No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13320.286375861868796No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10940.2352066012646117No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5290.11373335655299781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)