FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465123
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68901.4813285948018051No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15680.3371151286863905No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14460.3108855077044137No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11150.23972153602380444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8880.19091724124586398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5490.11803329441889565No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4870.10470348703461235No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4790.1029835118882532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)