FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510830
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31420.6150774230174423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24480.47922009279016503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17940.3511931562359297No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16470.3224164594875007No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16310.31928430201828395No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15790.3091047902433295No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15780.30890903040150347No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13630.2668206644089032No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13480.26388426678151244No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10800.21142062917213164No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9990.19556408198422173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9160.1793160151126598No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8940.17500929859248673No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7890.15445451520075174No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6940.13585733022727717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6910.13527005070179904No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.13409549165084275No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6530.1278311767124092No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6520.12763541687058316No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6340.1241117397177143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5140.10062055869858857No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5110.10003327917311043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)