FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448290
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17390.3879185348769769No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17000.37921880925293894No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13790.3076133752704722No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13410.2991367195342301No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13140.29311383256374224No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11790.26299939771130293No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9730.2170470008253586No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9340.2083472752013206No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8580.19139396372883624No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8560.19094782395324456No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8520.19005554440206116No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7480.16685627607129314No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7430.1657409266323139No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7400.16507171696892636No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7270.16217180842758036No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7030.15681813112048004No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6880.15347208280354235No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC6660.14856454527203372No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6050.1349572821164871No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6010.1340650025653037No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5800.12938053492159093No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5800.12938053492159093No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5750.1282651854826117No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5320.11867318030739031No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4740.10573512681523121No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT4720.10528898703963951No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4580.10216600861049767No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4490.10015837962033505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)