FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448290
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64151.430993330210355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30200.6736710611434562No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21990.4905306832630663No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18030.40219500769591116No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15170.33839701978629905No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14160.31586696111891854No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13350.29779830020745496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13210.2946753217783131No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12040.26857614490619913No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.21771621048874615No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9440.21057797407927903No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG9360.20879341497691226No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8230.1835865176559816No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.1811327488902273No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7990.1782328403488813No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7710.1719868834905976No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7620.169979254500435No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6820.15213366347676727No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC6540.14588770661848358No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6110.13629570144326217No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5830.13004974458497848No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5660.12625755649244907No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5540.12358071783889893No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5150.11488099221486092No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4680.10439670748845613No Hit
GAACCGATCTACGCTACCATCGACGACCTGG4640.10350442793727276No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC4580.10216600861049767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)