FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486739
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19040.39117473635767835No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18520.38049139271765775No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15650.32152755378139003No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14570.29933907083673184No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14080.2892720739451739No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13500.27735603680822785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10690.2196248913688856No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10380.21325597496810403No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG10160.20873609881271069No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9780.2009290399988495No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9300.19106749202344583No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8270.1699062536595588No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8150.1674408666657079No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7960.1635373372587773No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7900.16230464376185183No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7740.15901746110338394No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7720.15860656327107547No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC7350.15100495337336847No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7030.14443058805643272No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7030.14443058805643272No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6990.14360879239181573No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6930.14237609889489028No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6420.1318982041710239No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5960.12244755402792873No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5230.107449783148669No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5160.1060116407355893No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT5080.10436804940635534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)