FastQCFastQC Report
Wed 31 May 2023
EGAF00007927696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486739
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33190.681884952715932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29680.6097723831457927No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23860.4902011139440234No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19360.39774910167461414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16840.3459759748037449No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15900.3266637766852461No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15490.31824037112292214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15220.3126932503867576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12960.2662617953358987No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11510.23647170249353353No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG11200.23010278609275195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11010.22619925668582136No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9400.19312198118498825No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9140.18778030936497794No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8930.18346588212573886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8720.17915145488649975No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8220.1688790090787876No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7950.16333188834262305No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7290.14977225987644302No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7080.1454578326372039No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6990.14360879239181573No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6690.13744532490718844No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA6390.13128185742256115No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.1251183899379339No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5210.10703888531636051No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG5120.10518984507097233No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC5050.10375170265789263No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4880.1002590710832705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)