FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451791
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17340.38380578630384404No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16570.3667625074426007No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14280.3160753534266951No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13230.2928345186159087No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13190.2919491534802597No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12570.2782259938777001No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9340.20673275917404288No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8970.19854313166928955No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8860.19610837754625482No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8400.18592667848629124No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8260.1828279005115197No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8040.17795839226545018No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7710.17065412989634587No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7340.16246450239159257No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7270.1609151134042068No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7180.15892304184899653No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6630.14674927123382273No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6410.1418797629877532No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6310.13966635014863066No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC6100.1350181831864734No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5930.13125538135996512No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5910.1308126987921406No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5850.1294846510886671No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5270.11664685662175651No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5130.113548078646985No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT5040.11155600709177474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)