FastQCFastQC Report
Sun 21 May 2023
EGAF00007927698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451791
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66611.474354292139507No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30640.6781896939071385No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21820.48296668149653266No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17780.3935448027959831No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16070.3556954432469881No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14230.31496864700713384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13970.30921377362541524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13600.30102414612066203No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11800.26118271501645673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9970.2206772600605147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9190.2034126399153591No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8750.19367362342322003No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8730.19323094085539552No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8310.18393460693108096No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7980.17663034456197665No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7950.1759663207102399No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7290.16135779597203131No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6230.13789561987733265No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6220.1376742785934204No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5850.1294846510886671No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5760.12749257953345686No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC5730.12682855568172008No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5490.12151636486782605No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5160.11421210249872174No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC4840.1071291814135297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)