FastQCFastQC Report
Sun 21 May 2023
EGAF00007927700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476952
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66951.4037051946527113No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23070.48369647260101645No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14660.30736845636458177No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11720.24572703332830137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.2335664804844093No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8100.1698284104060786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8100.1698284104060786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.1597645046042369No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7490.15703886344957144No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7100.14886193998557506No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5910.12391184018517587No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5640.11825089317163992No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5140.10776765796138815No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA5040.10567101091933778No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5030.10546134621513277No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4770.10001006390580183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4770.10001006390580183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)