FastQCFastQC Report
Sun 21 May 2023
EGAF00007927702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524311
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33010.6295881642765457No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24050.45869722359439347No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17760.33873025742355206No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13340.2544291460602581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11850.22601089811199843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9100.17356111163031102No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8990.1714631201710435No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8760.16707641075621146No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.1666949577636174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.1430448722227838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.11386371828933592No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5920.11291008580785067No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5720.10909555588190978No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA5480.1045181199707807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5380.10261085500781024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)