FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575946
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29870.5186250099835749No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26330.45716091439127976No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23870.41444857677629504No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19790.34360860219534467No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18790.32624586332746475No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17680.30697322318411796No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17100.29690283464074757No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16600.2882214652068076No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14770.25644765307858725No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13450.23352883777298566No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13240.22988266261073087No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13170.22866727088997926No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12880.2236320766182941No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG12800.2222430575088637No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11690.2029704173655169No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11570.20088688870137128No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10990.19081650015800092No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10630.18456591416556414No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10170.17657905428633935No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9710.16859219440711457No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9260.16077896191656857No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8660.15036131859584057No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8500.1475832803769798No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8480.14723602559962218No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8250.1432425956600098No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8220.1427217134939734No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8050.1397700478864338No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7570.13143593322985142No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7370.12796338545627542No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT7240.12570622940345103No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7090.12310181857326903No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7030.12206005424119622No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7030.12206005424119622No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6930.12032378035440822No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6780.11771936952422622No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6680.11598309563743824No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6570.11407319436197144No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6530.11337868480725624No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6440.11181603830914705No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6390.11094790136575304No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6240.10834349053557105No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6140.10660721664878305No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5760.10000937587898864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)