FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509835
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22770.4466150813498485No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG22440.44014239901144486No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14840.2910745633391195No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14390.2822481783322055No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13840.2714603744348662No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13290.26067257053752685No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12800.2510616179744427No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12410.24341208430178393No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10750.21085253072072335No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9240.18123510547530083No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT9050.1775084095834927No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8890.17437013935881215No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8770.17201643669030175No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8650.16966273402179136No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8640.16946659213274884No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8130.15946335579157964No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG8060.1580903625682819No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8020.15730579501211175No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7960.15612894367785657No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7910.1551482342326439No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7840.15377524100934617No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7110.13945688310924123No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6480.12709994409956163No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6100.11964655231594536No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5830.11435072131179694No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5830.11435072131179694No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5780.11337001186658428No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5670.11121245108711643No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5610.11003559975286122No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5320.10434748497062775No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT5250.10297449174733002No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5230.10258220796924494No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5220.10238606608020241No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA5130.1006207890788196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)