FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30990.6078437141428109No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA23070.4524993380211245No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG21770.42700089244559514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17560.3444251571586886No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15920.31225788735571314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15400.3020585091255014No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14990.2940166916747575No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14340.28126746888699283No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13880.2722449419910363No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12860.2522384693086979No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10590.20771426049604283No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10550.20692969293987273No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10130.1986917336000863No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.19261133503976777No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9310.18260809869859856No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9140.1792736865848755No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9040.17731226769445016No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8780.1722125785793443No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8640.16946659213274884No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8450.1657398962409407No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7830.15357909912030362No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC7660.15024468700658056No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7130.1398491668873263No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7020.1376916061078584No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6820.13376876832700776No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6460.12670766032147654No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6260.1227848225406259No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6260.1227848225406259No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6230.12219639687349829No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6120.12003883609403043No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6080.11925426853786028No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5720.11219316053232908No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5630.11042788353094629No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5400.10591662008296802No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5360.10513205252679787No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5270.1033667755254151No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5210.10218992419115988No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG5150.10101307285690468No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5150.10101307285690468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)