FastQCFastQC Report
Sun 21 May 2023
EGAF00007927709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514947
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG22780.4423756231223796No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22190.4309181333224585No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15220.2955643978894915No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14190.2755623394252224No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14140.2745913657133647No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13650.265075823337159No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13450.26119192848972805No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12840.24934604920506384No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10730.20837095856466784No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9570.18584436844956861No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9560.18565017370719705No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG9040.1755520471038767No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8830.17147395751407427No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8640.1677842574090149No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8440.16390036256158402No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8330.161764220395497No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8300.16118163616838238No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG8230.15982227297178156No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7830.15205448327691976No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7620.14797639368711732No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7290.1415679671888563No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6910.1341885669787376No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6780.13166403532790752No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6410.12447882986016037No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6150.1194297665585002No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6060.1176820138771563No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5790.11243875583312457No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5760.11185617160600994No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5710.11088519789415222No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5600.10874905572806522No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5450.10583613459249205No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5360.10408838191114814No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5230.10156385026031806No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5170.10039868180608878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)