FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535987
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15260.2847083977783043No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11740.21903516316627084No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10380.19366141342980334No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT8180.1526156417972824No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8150.1520559267295662No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7980.14888420801250776No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6770.12630903361462126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6690.1248164601007114No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6670.12444331672223394No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6350.11847302266659453No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6330.11809987928811706No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5990.11175644185400019No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5810.10839815144770301No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5620.10485328935216712No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5540.10336071583825726No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5460.10186814232434742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)