FastQCFastQC Report
Wed 31 May 2023
EGAF00007927712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535987
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32780.611581997324562No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17230.3214630205583344No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15480.2888129749415564No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12050.22481888553267151No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11750.21922173485550955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9290.1733250993027816No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA8590.16026508105607037No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8300.1548545020681472No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8000.14925735139098523No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7490.13974219523980994No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7130.13302561442721558No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6980.13022703908863462No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6780.12649560530385998No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6780.12649560530385998No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6560.1223910281406079No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.1218313130728917No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6390.11921930942354944No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6210.11586101901725229No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG6190.11548787563877483No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5820.10858472313694176No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5490.1024278573920636No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5480.10224128570282488No Hit

[OK]Adapter Content

Adapter graph