FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495400
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14350.2896649172385951No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11140.22486879289463058No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9580.19337908760597497No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7800.15744852644327817No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7590.15320952765442067No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT7380.14897052886556317No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6890.13907953169156237No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6820.13766653209527654No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6440.12999596285829634No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6160.12434396447315302No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG5940.11990310859911182No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5350.10799354057327412No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5320.10738796931772304No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT5270.1063786838918046No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC5210.10516754138070246No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5200.10496568429551878No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5150.10395639886960031No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT5140.10375454178441663No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5040.10173597093257973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)