FastQCFastQC Report
Sun 21 May 2023
EGAF00007927715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498659
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA45210.9066315859134197No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA39530.7927260913770733No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12040.24144756236225556No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11180.22420130790780876No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10600.2125701130431818No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9830.1971286991711771No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9500.19051095036888938No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8000.1604302739948542No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7980.16002919830986706No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7880.1580238198849314No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6420.1287452948808705No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6300.1263388407709477No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5930.11891894059868567No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5780.11591087296128216No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5670.11370495669385292No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5530.11089742689894297No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5450.1092931241589944No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5300.1062850565215909No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5150.10327698888418738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)