FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT97541.9560461156822597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68071.3650610938537155No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12640.25347983291186965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11320.22700883770271868No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10940.21938839968796311No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10900.2185862483179888No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10590.21236957520068828No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10230.2051502128709198No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8710.17466846081189752No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.1622351145772963No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8010.1606308118373478No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7840.1572216685149571No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6650.13335766525822257No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6410.12854475703837692No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6260.1255366894009734No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5830.11691356217375No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5800.1163119486462693No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5630.11290280532387864No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5310.10648559436408447No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5030.10087053477426458No Hit

[OK]Adapter Content

Adapter graph