FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504047
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT100401.9918777415598148No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72561.4395482960914359No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13820.2741807807605243No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11510.22835172116885927No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11160.2214079242610312No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11020.2186304054979No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10620.21069463760323937No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9910.1966086495902168No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8780.17419010528780055No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8260.16387360702474174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8230.16327842443264218No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7280.14443097568282323No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6480.128559439893502No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6230.1235995849593391No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6180.12260761397250652No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5990.11883812422254272No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5540.10991038534104954No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5360.10633928978845227No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5360.10633928978845227No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5350.10614089559108575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5190.1029665884332215No Hit

[OK]Adapter Content

Adapter graph