FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500065
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT17410.3481547398838151No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15410.30815993920790297No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14720.2943617329747133No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14390.2877625908631878No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13570.2713647225860638No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12300.2459680241568596No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12020.2403687520622319No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11910.23816903802505673No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10840.21677181966344375No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10100.20197374341335625No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9660.1931748872646556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8870.17737694099767032No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8110.16217891674082371No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8030.1605791247137872No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7540.15078039854818873No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7320.14638097047383838No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7260.14518112645356104No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7240.1447811784468019No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7210.14418125643666324No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6300.12598362212912323No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6110.12218411606491156No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5820.11638486996690431No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5530.11058562386889705No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5430.10858588383510144No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5410.10818593582834232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)