FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500065
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33380.6675132232809734No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29460.5891234139561857No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28050.5609270794796677No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16380.3275574175357203No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16240.3247577814884065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15740.3147590813194285No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13970.27936368272124623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12460.2491676082109326No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA11480.22957015587973562No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10580.21157249557557517No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10150.20297361343025408No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9450.18897543319368482No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8890.17777688900442942No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8810.17617709697739292No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8260.1651785267915171No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8200.16397868277123973No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8150.16297881275434192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.16177896873406455No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7610.15218021657184566No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7460.14918060652115225No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6450.12898323217981664No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6210.12418385609870718No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6200.12398388209532761No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5890.11778468799056123No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5840.11678481797366341No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5370.10738603981482407No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC5290.10578624778778759No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5130.10258666373371463No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5100.10198674172357594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)