FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503866
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT17600.3492992184429987No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15600.30960612543811256No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15150.3006751795120131No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14090.2796378402194234No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13890.2756685309189348No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12440.2468910384903923No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12090.2399447472145372No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10990.21811354606184977No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10120.20084705060472427No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9920.19687774130423566No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9580.190129915493405No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8420.167107921550571No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8420.167107921550571No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8210.16294014678505794No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7900.15678771736930056No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7760.15400920085895853No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7460.1480552369082256No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6790.1347580507515887No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6640.13178106877622225No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6360.12622403575553817No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6230.12364398471022056No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6160.12225472645504955No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5860.11630076250431663No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT5730.11372071145899902No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5410.10736981657821722No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5400.1071713511131928No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5160.10240817995260645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)