FastQCFastQC Report
Wed 31 May 2023
EGAF00007927726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503866
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33850.6718055991076993No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30690.6090905121599791No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29760.5906332239127069No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16520.3278649482203602No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16410.32568182810509144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16310.3236971734548471No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14380.28539333870513195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.24232633279483037No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10840.21513656408648332No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10680.2119611166460924No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10180.20203784339487088No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9060.17980971131213458No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8640.17147416178110847No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8630.17127569631608403No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8520.1690925762008153No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8500.16869564527076644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8440.16750485248061983No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8000.15877237201954486No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7440.14765830597817672No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7060.14011661830724836No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6560.1301933450560268No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6410.12721636308066034No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6380.12662096668558703No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6340.1258271048254893No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC6080.12066700273485412No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5810.11530843517919447No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5540.10994986762353483No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5110.1014158526274843No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5050.1002250598373377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)