FastQCFastQC Report
Sun 21 May 2023
EGAF00007927727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466109
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16250.34863089963935473No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14890.3194531751156918No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13720.2943517503416583No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13470.28898819803951437No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12770.27397025159351135No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11690.25079970564824966No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10950.23492359083390366No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10210.21904747601955765No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9170.19673509844263895No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9160.1965205563505532No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9090.1950187617059529No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7930.17013187902400512No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7760.16648466345854726No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7280.1561866430384309No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7210.15468484839383062No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6780.14545953843414308No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6630.14224140705285673No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6530.14009598613199917No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6500.13945235985574192No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6050.12979796571188285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5520.11842723483133774No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5480.11756906646299471No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5240.11242005625293654No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5150.11048917742416474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5020.1077001302270499No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4810.103194746293249No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4720.10126386746447719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)